WORKFLOW

1. Before sampling

Study design, networking and paperwork

1

Study design

Text to be added

2

Network and sampling strategy

Text to be added

3

Capture and sample export paperwork

Text to be added

2. In the field

Respetuous animal handling and correct sample
obtaintion and storage

1

Animal captures

Text to be added

2

Metadata collection

Text to be added

3

Sample obtaintion

Text to be added

4

Sample preservation

Text to be added

3. In the lab

Secure sample storage and high-quality sample processing

1

Sample storage

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2

DNA extraction

3

DNA shearing

4

Sequencing library preparation

5

DNA sequencing

4. In the server

Efficient data processing and sound result generation

1

Quality-filtering

2

Host genome profiling

3

Metagenomic profiling

Bioinformatic hologenomic approaches require reference genome sequences of host species to be available in order to split host DNA from metagenomic DNA and generate whole genome sequence profiles of analysed individuals.

5. In the end

FAIR data, open source publications,
high-quality dissemination and inspiring outreach

Address

The GLOBE Institute
Øster Farimagsgade 5,7
1353 Copenhagen K
Denmark

Contacts

Email: antton.alberdi[at]bio.ku.dk

Links

GLOBE Institute
University of Copenhagen

WORKFLOW

1. Before sampling

Study design, networking and paperwork

1

Study design

2

Network and sampling strategy

3

Capture and sample export paperwork

2. In the field

Respetuous animal handling and correct sample obtaintion and storage

1

Animal captures

2

Metadata collection

3

Sample obtaintion

4

Sample preservation

3. In the lab

Secure sample storage and high-quality sample processing

1

Sample storage

2

DNA extraction

3

DNA shearing

4

Sequencing library preparation

5

DNA sequencing

4. In the server

Efficient data processing and sound result generation

1

Quality-filtering

2

Host genome profiling

3

Metagenomic profiling

5. In the end

FAIR data, open source publications, high-quality dissemination and inspiring outreach

Address

Contacts

Links

Respetuous animal handling and correct sample
obtaintion and storage

FAIR data, open source publications,
high-quality dissemination and inspiring outreach